Web1.什么是GATK GATK是Genome Analysis Toolkit的缩写,是用来处理高通量测序数据的一套软件。最初,GATK被设计用来分析人类基因组和外显子,主要用来寻找SNP和indel。后开,GATK的功能越来越丰富,增加了short … http://www.biotrainee.com/thread-1376-1-1.html
GATK BQSR的意义与作用 - 腾讯云开发者社区-腾讯云
This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list. See more Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above. See more When writing files that need to be sorted, this will specify the number of records stored in RAM before spilling to disk. Increasing this … See more If true, assume that the input file is queryname sorted, even if the header says otherwise. boolean false See more If true, ignore missing mates, otherwise will throw an exception when missing mates are found. Boolean true See more WebJul 24, 2012 · FixMateInformation after GATK realignment. I'm using GATK to analyze some paired-end Illumina exome data and have been running into a problem after … rcot children
FixMateInformation after GATK realignment - SEQanswers
Web[Fri Mar 23 00:21:05 CST 2024] picard.sam.FixMateInformation done. Elapsed time: 86.68 minutes. 值得注意的是 前面的比对其实耗时也只有一个多小时,但是sortsam耗时比较 … WebGATK使用简介 Part1/2GATK(全称The Genome Analysis Toolkit)是Broad Institute开发的用于二代重测序数据分析的一款软件,里面包含了很多有用的工具。 WebNov 12, 2024 · 运行picard FixMateInformation的问题. 运行picard FixMateInformation单端测序数据正常,运行两端测序数据没有结果。. JDK6新增错误类型。. 当GC为释放很小空 … rcot chief executive