WitrynaIntrons of plant tubulin genes are important regulatory elements for supporting gene expression. Introns can either increase the level of expression through intron-mediated enhancement (IME), or they can change the actual site of gene expression. The molecular basis of both IME and intron dependent spatial expression (IDSE) remains … Witryna1 cze 2008 · Introns mediate complex gene regulation via alternative splicing; they may act in cis as expression enhancers through IME (intron-mediated enhancement of gene expression) and in trans as negative regulators through the generation of intronic microRNA. Furthermore, some introns also contain promoter sequences for …
The enduring mystery of intron-mediated enhancement - PubMed
WitrynaThis process of intron-mediated enhancement (IME) is most thoroughly studied in Arabidopsis thaliana, where it has been shown that enhancing introns are typically located near the promoter and are compositionally distinct from downstream introns. In this study, we perform a comprehensive comparative analysis of several sequenced … Witryna22 paź 2024 · Plant biotechnology traits provide a means to increase crop yields, manage weeds and pests, and sustainably contribute to addressing the needs of a growing population. One of the key challenges in developing new traits for plant biotechnology is the availability of expression elements for efficacious and predictable … rdc world roach
Intron-mediated enhancement - Wikipedia
WitrynaThis has been described as “intron-mediated enhancement” or IME (Gallegos and Rose, 2015), although the need for a more specific name is becoming increasingly apparent as new information emerges, and to avoid confusion with the general use of the same phrase to describe any boost in expression caused by an intron regardless of … Witryna28 kwi 2008 · However, the mechanism underlying intron-mediated enhancement (IME) in plants is largely unknown. Rose et al. (pages 543–551) adopted a bioinformatics … Since it has been shown that specifically the first intron bears the capacity to influence expression of the gene it is part of, the set of Arabidopsis introns was split into two sets, one with only the first introns, i.e. the 5′-most, of each gene, and another for all remaining introns, termed “other introns”. … Zobacz więcej For identifying candidate intron motifs associated with IME, a k-mer-based strategy similar to IMEter was applied, with additionally utilizing conservation and relative position in introns as informative criteria, similarly … Zobacz więcej The set of hexamers contained sequence-related hexamer sequences, which may be equivalent in function or part of a larger consensus motif, … Zobacz więcej To further evaluate the newly identified motifs, they were compared to IMEter, the most commonly used tool for identifying potentially IME … Zobacz więcej how to spell arabian